`pnpm install --frozen-lockfile` fails with pnpm v9

### Verify latest release

- [X] I verified that the issue exists in the latest pnpm release

### pnpm version

9.0.0

### Which area(s) of pnpm are affected? (leave empty if unsure)

Lockfile

### Link to the code that reproduces this issue or a replay of the bug

https://github.com/DimensionDev/Maskbook/pull/11571/files

### Reproduction steps

Clone the PR and try an upgrade

### Describe the Bug

I upgraded pnpm from 8.7.6 to 9.0.0 and the lockfile is broken (as you can see in the link I mentioned).



One thing you can observe is that: peer dependencies to react are mostly resolved to 18.2.0, not `0.0.0-experimental-8039e6d0b-20231026` as I specified in `package.json/pnpm/peerDependencyRules/allowedVersions`.



I tried to remove the whole section of `allowedVersions` and reinstall, then add it back hope it can re-resolve dependencies, but that does not work.

### Expected Behavior

Upgrade and keep my peer dependencies version correct

### Which Node.js version are you using?

21

### Which operating systems have you used?

- [X] macOS
- [ ] Windows
- [ ] Linux

### If your OS is a Linux based, which one it is? (Include the version if relevant)

_No response_

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