EnvGap
Build error with cython 3
envgap__Ezibenroc__PyRoaringBitMap-93
01 / FAILURE SIGNATURE
Captured in a clean container
error: subprocess-exited-with-error
02 / ENVIRONMENT RECIPE
- Base commit
89c361ab0961cd3b51249dde4fce95937ec10bdd- Manifest
setup.py- Reproduce
python3 -m pip install .- Run under trace
python3 -c " import importlib, importlib.metadata as md mods = set() for dist in md.distributions(): if 'file:///work' not in (dist.read_text('direct_url.json') or ''): continue top = (dist.read_text('top_level.txt') or '').split() if not top: top = [str(f).split('/')[0].removesuffix('.py') for f in (dist.files or []) if str(f).endswith('.py') and not str(f).startswith(('..', '_'))] mods.update(t for t in top if t.isidentifier() and not t.startswith('_')) assert mods, 'the project itself is not installed' for name in sorted(mods): importlib.import_module(name) print('imported', sorted(mods)) "
Reference environment fix used for admission
diff --git a/setup.py b/setup.py
index 1506e43..fcea37e 100755
--- a/setup.py
+++ b/setup.py
@@ -72,7 +72,7 @@ setup(
version=VERSION,
description='Fast and lightweight set for unsigned 32 bits integers.',
long_description=long_description,
- setup_requires=['cython'],
+ setup_requires=['cython<3.0.0'],
url='https://github.com/Ezibenroc/PyRoaringBitMap',
author='Tom Cornebize',
author_email='tom.cornebize@gmail.com',03 / ORIGINAL ISSUE TEXT
Ezibenroc/PyRoaringBitMap #93 · read the original issue
Building pyroaring with the cython 3.0.0 results in the following error logs:
```
$ sh -c -e 'python -P -mbuild --no-isolation --wheel --outdir /buildstream-build/dist .
'
* Getting build dependencies for wheel...
* Building wheel...
running bdist_wheel
running build
running build_ext
Error compiling Cython file:
------------------------------------------------------------
...
self.__check_compatibility(other)
cdef croaring.roaring_bitmap_t *r = func(self._c_bitmap, other._c_bitmap)
return self.from_ptr(r)
def __or__(self, other):
return (<AbstractBitMap>self).binary_op(<AbstractBitMap?>other, croaring.roaring_bitmap_or)
^
------------------------------------------------------------
pyroaring/abstract_bitmap.pxi:447:80: Cannot assign type 'roaring_bitmap_t *(const roaring_bitmap_t *, const roaring_bitmap_t *) noexcept' to 'roaring_bitmap_t *(const roaring_bitmap_t *, const roaring_bitmap_t *) except *'
Error compiling Cython file:
------------------------------------------------------------
...
def __or__(self, other):
return (<AbstractBitMap>self).binary_op(<AbstractBitMap?>other, croaring.roaring_bitmap_or)
def __and__(self, other):
return (<AbstractBitMap>self).binary_op(<AbstractBitMap?>other, croaring.roaring_bitmap_and)
^
------------------------------------------------------------
pyroaring/abstract_bitmap.pxi:450:80: Cannot assign type 'roaring_bitmap_t *(const roaring_bitmap_t *, const roaring_bitmap_t *) noexcept' to 'roaring_bitmap_t *(const roaring_bitmap_t *, const roaring_bitmap_t *) except *'
Error compiling Cython file:
------------------------------------------------------------
...
def __and__(self, other):
return (<AbstractBitMap>self).binary_op(<AbstractBitMap?>other, croaring.roaring_bitmap_and)
def __xor__(self, other):
return (<AbstractBitMap>self).binary_op(<AbstractBitMap?>other, croaring.roaring_bitmap_xor)
^
------------------------------------------------------------
pyroaring/abstract_bitmap.pxi:453:80: Cannot assign type 'roaring_bitmap_t *(const roaring_bitmap_t *, const roaring_bitmap_t *) noexcept' to 'roaring_bitmap_t *(const roaring_bitmap_t *, const roaring_bitmap_t *) except *'
Error compiling Cython file:
------------------------------------------------------------
...
def __xor__(self, other):
return (<AbstractBitMap>self).binary_op(<AbstractBitMap?>other, croaring.roaring_bitmap_xor)
def __sub__(self, other):
return (<AbstractBitMap>self).binary_op(<AbstractBitMap?>other, croaring.roaring_bitmap_andnot)
^
------------------------------------------------------------
pyroaring/abstract_bitmap.pxi:456:80: Cannot assign type 'roaring_bitmap_t *(const roaring_bitmap_t *, const roaring_bitmap_t *) noexcept' to 'roaring_bitmap_t *(const roaring_bitmap_t *, const roaring_bitmap_t *) except *'
Error compiling Cython file:
------------------------------------------------------------
...
self.__check_compatibility(other)
func(self._c_bitmap, other._c_bitmap)
return self
def __ior__(self, other):
return (<BitMap>self).binary_iop(<AbstractBitMap?>other, croaring.roaring_bitmap_or_inplace)
^
------------------------------------------------------------
pyroaring/bitmap.pxi:115:73: Cannot assign type 'void (roaring_bitmap_t *, const roaring_bitmap_t *) noexcept' to 'void (roaring_bitmap_t *, const roaring_bitmap_t *) except *'
Error compiling Cython file:
------------------------------------------------------------
...
def __ior__(self, other):
return (<BitMap>self).binary_iop(<AbstractBitMap?>other, croaring.roaring_bitmap_or_inplace)
def __iand__(self, other):
return (<BitMap>self).binary_iop(<AbstractBitMap?>other, croaring.roaring_bitmap_and_inplace)
^
------------------------------------------------------------
pyroaring/bitmap.pxi:118:73: Cannot assign type 'void (roaring_bitmap_t *, const roaring_bitmap_t *) noexcept' to 'void (roaring_bitmap_t *, const roaring_bitmap_t *) except *'
Error compiling Cython file:
------------------------------------------------------------
...
def __iand__(self, other):
return (<BitMap>self).binary_iop(<AbstractBitMap?>other, croaring.roaring_bitmap_and_inplace)
def __ixor__(self, other):
return (<BitMap>self).binary_iop(<AbstractBitMap?>other, croaring.roaring_bitmap_xor_inplace)
^
------------------------------------------------------------
pyroaring/bitmap.pxi:121:73: Cannot assign type 'void (roaring_bitmap_t *, const roaring_bitmap_t *) noexcept' to 'void (roaring_bitmap_t *, const roaring_bitmap_t *) except *'
Error compiling Cython file:
------------------------------------------------------------
...
def __ixor__(self, other):
return (<BitMap>self).binary_iop(<AbstractBitMap?>other, croaring.roaring_bitmap_xor_inplace)
def __isub__(self, other):
return (<BitMap>self).binary_iop(<AbstractBitMap?>other, croaring.roaring_bitmap_andnot_inplace)
^
------------------------------------------------------------
pyroaring/bitmap.pxi:124:73: Cannot assign type 'void (roaring_bitmap_t *, const roaring_bitmap_t *) noexcept' to 'void (roaring_bitmap_t *, const roaring_bitmap_t *) except *'
Compiling pyroaring/pyroaring.pyx because it changed.
[1/1] Cythonizing pyroaring/pyroaring.pyx
Traceback (most recent call last):
File "/usr/lib/python3.11/site-packages/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
main()
File "/usr/lib/python3.11/site-packages/pyproject_hooks/_in_process/_in_process.py", line 335, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.11/site-packages/pyproject_hooks/_in_process/_in_process.py", line 251, in build_wheel
return _build_backend().build_wheel(wheel_directory, config_settings,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 416, in build_wheel
return self._build_with_temp_dir(['bdist_wheel'], '.whl',
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 401, in _build_with_temp_dir
self.run_setup()
File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 488, in run_setup
self).run_setup(setup_script=setup_script)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 338, in run_setup
exec(code, locals())
File "<string>", line 69, in <module>
File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 107, in setup
return distutils.core.setup(**attrs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup
return run_commands(dist)
^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands
dist.run_commands()
File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands
self.run_command(cmd)
File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1234, in run_command
super().run_command(command)
File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
cmd_obj.run()
File "/usr/lib/python3.11/site-packages/wheel/bdist_wheel.py", line 343, in run
self.run_command("build")
File "/usr/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1234, in run_command
super().run_command(command)
File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
cmd_obj.run()
File "/usr/lib/python3.11/site-packages/setuptools/_distutils/command/build.py", line 131, in run
self.run_command(cmd_name)
File "/usr/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1234, in run_command
super().run_command(command)
File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
cmd_obj.run()
File "/usr/lib/python3.11/site-packages/setuptools/command/build_ext.py", line 84, in run
_build_ext.run(self)
File "/usr/lib/python3.11/site-packages/setuptools/_distutils/command/build_ext.py", line 345, in run
self.build_extensions()
File "/usr/lib/python3.11/site-packages/setuptools/_distutils/command/build_ext.py", line 467, in build_extensions
self._build_extensions_serial()
File "/usr/lib/python3.11/site-packages/setuptools/_distutils/command/build_ext.py", line 493, in _build_extensions_serial
self.build_extension(ext)
File "/usr/lib/python3.11/site-packages/setuptools/command/build_ext.py", line 246, in build_extension
_build_ext.build_extension(self, ext)
File "/usr/lib/python3.11/site-packages/Cython/Distutils/build_ext.py", line 122, in build_extension
new_ext = cythonize(
^^^^^^^^^^
File "/usr/lib/python3.11/site-packages/Cython/Build/Dependencies.py", line 1134, in cythonize
cythonize_one(*args)
File "/usr/lib/python3.11/site-packages/Cython/Build/Dependencies.py", line 1301, in cythonize_one
raise CompileError(None, pyx_file)
Cython.Compiler.Errors.CompileError: pyroaring/pyroaring.pyx
ERROR Backend subprocess exited when trying to invoke build_wheel
```04 / LABELS
Labels checked by running the task · needs human review
misspecificationLabel rules and the text that matched
[
{
"category": "misspecification",
"rule": "diff.changes_existing_manifest_line",
"source": "manifest_diff:setup.py",
"excerpt": "- setup_requires=['cython'],\n+ setup_requires=['cython<3.0.0'],"
}
]Mined from a merged pull request linked to the issue whose changed files are all environment files.
The base commit is the pull request's base, not the dated default-branch commit; the registry is pinned to the merge date so the pull request's own pins resolve.
Default commands from envgap default-recipe synthesizer v1; gold_files are the pull request's environment diff.
Preparation uses current registries. Historical package availability is not enforced here; execution metadata records this limitation separately from the oracle's date-bounding policy.